• Freyre-González, J.A.* and Tauch, A.

  • Functional architecture and global properties of the Corynebacterium glutamicum regulatory network: novel insights from a dataset with a high genomic coverage

  • Journal of Biotechnology

  • 2017

  • Ibarra-Arellano, M.A., Campos-González, A.I., Treviño-Quintanilla, L.G., Tauch, A., Freyre-González, J.A.*

  • Abasy Atlas: A comprehensive inventory of systems, global network properties, and systems-level elements across bacteria

  • Database (Oxford)

  • 2016

  • González-Duarte, R.J., Cázares-Ordoñez, V., Romero-Córdoba, S., Díaz, L., Ortíz, V., Freyre-González, J.A., Hidalgo-Miranda, A., Larrea, F., Avila, E.

  • Calcitriol increases Dicer expression and modifies the microRNAs signature in SiHa cervical cancer cells

  • Biochemistry and Cell Biology

  • 2015

  • Alvarez-Vasquez, F.J., Freyre-González, J.A., Balderas-Martínez, Y.I., Delgado-Carrillo, M.I., Collado-Vides, J.

  • Mathematical modeling of the apo and holo transcriptional regulation in Escherichia coli

  • Molecular Biosystems

  • 2015

  • Freyre-González, J.A., Manjarrez-Casas, A.M., Merino, E., Martinez-Nuñez, M., Perez-Rueda, E., and Gutiérrez-Ríos, R.M.

  • Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis

  • BMC Systems Biology

  • 2013

  • Treviño-Quintanilla, L.G., Freyre-González, J.A.§, and Martínez-Flores, I

  • Anti-Sigma Factors in E. coli: Common Regulatory Mechanisms Controlling Sigma Factors Availability

  • Current Genomics

  • 2013

  • Freyre-González, J.A.*, Treviño-Quintanilla, L.G., Valtierra-Gutiérrez, I., Gutierrez-Ríos, R.M., and Alonso-Pavón, J.A.

  • Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach

  • Journal of Biotechnology

  • 2012

  • Treviño-Quintanilla, L.G., Freyre-González, J.A., Guillén-Garcés, R.A., and Olvera-Carranza, C.

  • Molecular characterization of chloranilic acid degradation in Pseudomonas putida TQ07

  • Journal of Microbiology

  • 2011

  • Freyre-Gonzalez, J.A.* and Trevino-Quintanilla, L.G.

  • Analyzing regulatory networks in bacteria

  • Nature Education

  • 2010

  • Vázquez, C.D., Freyre-González, J.A., Gosset, G., Loza, J.A., and Gutierrez-Ríos, R.M.

  • Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli

  • BMC Microbiology

  • 2009

  • Freyre-González, J.A.*, Alonso-Pavón, J.A., Treviño-Quintanilla, L.G., and Collado-Vides, J.

  • Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach

  • Genome Biology

  • 2008

  • Gutierrez-Ríos, R.M., Freyre-González, J.A., Resendis, O., Collado-Vides, J., Saier, M., and Gosset, G.

  • Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli

  • BMC Microbiology

  • 2007

  • Resendis-Antonio, O., Freyre-González, J.A., Menchaca-Méndez, R., Gutiérrez-Ríos, R.M., Martínez-Antonio, A., Ávila-Sánchez, C., and Collado-Vides, J.

  • Modular analysis of the transcriptional regulatory network of E. coli

  • Trends in Genetics

  • 2005